Skill catalog
308research & science agent skills synced from skills.sh, with their install counts. Read them here, or let your agent fetch the right one through the Graph-of-Skills MCP server.
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- alphagenome-single-variant-analysis google-deepmind/science-skills
Analyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), histone marks (ChIP), and transcription factors using the AlphaGenome API. Use when the user asks about non-coding variant…
2,178 installs - clinvar-database google-deepmind/science-skills
Use when needing clinical significance, pathogenicity classifications (e.g., Pathogenic, Benign, VUS), clinical evidence rationales, or finding "hard positive" benchmark controls for human genomic variants.
2,173 installs - huggingface-papers huggingface/skills
Look up and read Hugging Face paper pages in markdown, and use the papers API for structured metadata such as authors, linked models/datasets/spaces, Github repo and project page. Use when the user shares a Hugging Face…
2,155 installs - opentargets-database google-deepmind/science-skills
Query Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for therapeutic target identification.
2,153 installs - protein-sequence-msa google-deepmind/science-skills
Performs multiple sequence alignment of proteins with EBI Clustal Omega. Use when you need to align multiple sequences to assess similarity, domain conservation, or key residue conservation. Supports up to 4000 sequence…
2,148 installs - protein-sequence-similarity-search google-deepmind/science-skills
Searches for homologous protein sequences using MMseqs2 (fast, default) or BLAST (comprehensive, fallback). Trigger this whenever the user provides a protein sequence or FASTA file and asks to find homologues, sequence…
2,148 installs - dbsnp-database google-deepmind/science-skills
Use when you want to look up, map, and search for short genetic variants (SNPs, indels) in NCBI's dbSNP database. Resolves between rsIDs, genomic coordinates in VCF format, and HGVS strings. For an rsID, returns variant…
2,146 installs - embl-ebi-ols google-deepmind/science-skills
Query and search the EMBL-EBI Ontology Lookup Service (OLS) for biomedical ontology terms, definitions, and hierarchies across 250+ ontologies (e.g., GO, DOID, HP). Use when the user asks to search for terms, retrieve d…
2,140 installs - math-reasoning lingzhi227/agent-research-skills
Formal mathematical reasoning for research papers — derive equations, write proofs, formalize problem settings, select statistical tests, and generate LaTeX math notation. Use when the user needs mathematical derivation…
2,139 installs - string-database google-deepmind/science-skills
Query the STRING database for protein-protein interactions (PPIs), functional enrichment, and homology. Use when the user asks about interactions between specific proteins, interaction evidence, confidence scores, prote…
2,138 installs - interpro-database google-deepmind/science-skills
Identify domains, families, and sites in proteins; find all proteins in a family or sharing a domain; explore species distribution for a domain; annotate genomes with protein families and GO terms. InterPro combines 14…
2,137 installs - foldseek-structural-search google-deepmind/science-skills
Performs 3D structural searches of proteins against various databases (PDB, AlphaFold, CATH, MGnify, etc.) using the Foldseek API. Use ONLY when the user provides a physical 3D coordinate file (.cif, .mmcif, or .pdb) an…
2,136 installs - gtex-database google-deepmind/science-skills
Use when you want to retrieve quantitative RNA expression data and variant eQTL information from the GTEx (Genotype-Tissue Expression) Project across 54 non-diseased tissue sites.
2,130 installs - research-decision-room nexu-io/open-design
Turn messy user research notes, interviews, support tickets, surveys, and product context into an evidence-backed decision room: a single HTML artifact with an evidence ledger, theme map, confidence heatmap, opportunity…
2,123 installs - ucsc-conservation-and-tfbs google-deepmind/science-skills
Fetch Evolutionary Conservation scores (phyloP, phastCons) and Transcription Factor Binding Sites (TFBS) from the UCSC Genome Browser. Use when analyzing whether genomic variants or regions are evolutionarily conserved,…
2,100 installs - systems-thinking refoundai/lenny-skills
Help users think in systems and understand complex dynamics. Use when someone is dealing with multi-stakeholder problems, trying to understand second-order effects, managing platform ecosystems, or analyzing complex org…
2,098 installs - hypothesis-generation k-dense-ai/scientific-agent-skills
Formulates evidence-bounded scientific questions, candidate hypotheses, rival explanations, causal or associational claims, discriminating predictions, measurements, and preregistration-ready analysis plans. Used when t…
2,084 installs - x-ray-a-company useosint/skills
Corporate due-diligence workflow — resolve a brand or website to its registered legal entity, map group structure and beneficial ownership, profile officers and directors, enumerate the digital estate, and screen litiga…
2,057 installs - scholar-evaluation k-dense-ai/scientific-agent-skills
Provides qualitative-first, evidence-traceable developmental review of scholarly works and audit low-stakes research-assessment rubrics with optional local quality controls. Never use for ranking people or consequential…
2,040 installs - read-deleted-pages useosint/skills
Recover deleted, edited or historical web content using the Wayback Machine and its CDX API, archive.today, Common Crawl and Memento/Timetravel. Use when a page is deleted, changed or 404s, checking what a site used to…
2,022 installs - bgpt-paper-search k-dense-ai/scientific-agent-skills
Searches BGPT scientific papers by topic or DOI and retrieves claim-level evidence extracted from full text, including experiments, reported statistics, scope, limitations, and provenance. Use for literature reviews, ev…
2,021 installs - research-grants k-dense-ai/scientific-agent-skills
Supports research proposal preparation and review for NSF, NIH, DOE, DARPA, and Taiwan NSTC, including opportunity-specific requirements, aims, review criteria, budgets, broader impacts, forms, and resubmissions. Use fo…
2,006 installs - literature-review davila7/claude-code-templates
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-anal…
1,990 installs - market-research-reports k-dense-ai/scientific-agent-skills
Builds evidence-traceable market research reports and assumption-driven market sizing or forecast scenarios. Use for market definition, industry and customer evidence, competitive landscapes, TAM/SAM/SOM reconciliation,…
1,976 installs - exa-search cline/skills
Deep research powered by Exa. Use for lead generation, literature reviews, deep dives, competitive analysis, or any query where one search falls short, including phrases like 'research this', 'find everything about', 'f…
1,950 installs - academic-research-suite imbad0202/academic-research-skills-codex
ARS-Codex research, writing, manuscript review, study screening, and experiments. Use for deep research, literature or systematic reviews, meta-analysis, research questions, drafts, revisions, roadmaps, abstracts, citat…
1,948 installs - layers-domain jamiemill/layers-skills
Techniques for mapping a domain's concepts, terminology conflicts, and bounded contexts — the raw material the conceptual model is built from
1,945 installs - research-lookup k-dense-ai/scientific-agent-skills
Compiles current scholarly evidence for a scientific manuscript or research brief when the user explicitly asks to gather literature, references, background evidence, competing findings, or a manuscript research packet.…
1,935 installs - layers-observed-behaviour jamiemill/layers-skills
Techniques for planning user research and synthesising it into grounded, confidence-rated findings about what users actually do
1,930 installs - geomaster k-dense-ai/scientific-agent-skills
Supports geospatial research workflows for remote sensing, vector and raster GIS, spatial statistics, terrain and network analysis, and machine learning for Earth observation. Use when processing satellite imagery, alig…
1,922 installs - market-research-reports davila7/claude-code-templates
Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics an…
1,920 installs - clinical-reports k-dense-ai/scientific-agent-skills
Creates safety-bounded draft structures and runs local deterministic checks for clinical case, diagnostic, trial, safety, and aggregate research reports. Use only with synthetic, de-identified, or aggregate inputs and v…
1,907 installs - clinical-decision-support k-dense-ai/scientific-agent-skills
Prepares and validates research-only clinical decision-support evaluation, evidence-profile, cohort, survival, biomarker/model, privacy, and governance artifacts. Supports aggregate or synthetic research documentation a…
1,902 installs - rdkit k-dense-ai/scientific-agent-skills
Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpl…
1,900 installs - ccf-idea-optimizer mikubaka88/ccfa-skills
Develop and optimize rough CCF research ideas into problems, insights, mechanisms, and evidence plans. Use for 优化idea, 具象化idea, 找方向, 方向探索, and rescue routes when development is the requested deliverable. Judging whether…
1,891 installs - ccf-literature-searcher mikubaka88/ccfa-skills
Find and verify external literature, prior art, datasets, benchmarks, and citation candidates. Use for 文献检索, 相关工作, benchmark搜索, and research opportunity maps. Recurring recent-paper watch belongs to ccf-literature-monit…
1,889 installs - adaptyv k-dense-ai/scientific-agent-skills
Uses the Adaptyv Bio Foundry API and Python SDK to design protein characterization experiments, estimate costs, submit sequences, monitor laboratory progress, and retrieve results. Applies to Adaptyv Foundry, its target…
1,886 installs - molecular-dynamics k-dense-ai/scientific-agent-skills
Runs and analyzes molecular dynamics simulations with OpenMM and MDAnalysis. Sets up protein/small molecule systems, defines force fields, runs energy minimization and production MD, and analyzes trajectories (RMSD, RMS…
1,886 installs - ccf-experiment-designer mikubaka88/ccfa-skills
Design and interpret CCF experiments: datasets, baselines, metrics, ablations, execution specifications, observed feedback, and result-table contents. Use for 设计实验, 消融, benchmark planning, 实验结果分析, and evidence design wi…
1,885 installs - fluidsim k-dense-ai/scientific-agent-skills
Plans, configures, inspects, restarts, and analyzes bounded FluidSim computational-fluid-dynamics simulations with explicit numerical-validity and HPC safety checks. Use for FluidSim solver selection, parameter review,…
1,885 installs - ccf-integrity-auditor mikubaka88/ccfa-skills
Audit existing CCF claims, numbers, terminology, and citations against supplied or verified evidence. Use for 引用核验, claim审计, 数字一致性, and BibTeX/context checks. Full scientific review belongs to ccf-paper-reviewer; new li…
1,882 installs - ccf-idea-reviewer mikubaka88/ccfa-skills
Assess research ideas for value, novelty, insight, and mechanism. Use for 思路审核, 靠谱吗, 值得做吗, 创新够不够, idea review, scoring, and ranking; no numeric-score request is needed. Default to concept-only review without experiment…
1,881 installs - ccf-literature-monitor mikubaka88/ccfa-skills
Scan recent arXiv/OpenReview papers, venue feeds, labs, and competitors for overlap. Use for 竞品监控, 新论文追踪, 论文跟踪, and recurring novelty watch. Give dated evidence and changes since the prior scan. Broad related-work retri…
1,878 installs - medchem k-dense-ai/scientific-agent-skills
Applies medicinal chemistry filters for compound triage, using drug-likeness rules (Lipinski, Veber, CNS), structural alert catalogs (PAINS, NIBR, ChEMBL), complexity metrics, and the medchem query language for library…
1,872 installs - cirq k-dense-ai/scientific-agent-skills
Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or running quantum characterization experiments. Best for Google hardware, noise modeling, and low-level…
1,871 installs - depmap k-dense-ai/scientific-agent-skills
Retrieves and analyzes Cancer Dependency Map (DepMap) release data, including CRISPR Chronos gene effects, cancer model annotations, omics biomarkers, and PRISM drug sensitivity. Supports cancer-selective dependency, co…
1,871 installs - diffdock k-dense-ai/scientific-agent-skills
Predicts protein-small-molecule binding poses with DiffDock and DiffDock-L from PDB or sequence plus SMILES/SDF/MOL2. Covers batch docking, pose triage, confidence interpretation, and validation. Use for molecular docki…
1,871 installs - pathml k-dense-ai/scientific-agent-skills
Supports local computational pathology research with PathML: slide loading and tiling, preprocessing and QC, h5path storage, multiplex quantification, spatial graphs, and bounded model inference. Use for whole-slide H&E…
1,870 installs - deep-research lingzhi227/agent-research-skills
Conduct systematic academic literature reviews in 6 phases, producing structured notes, a curated paper database, and a synthesized final report. Output is organized by phase for clarity.
1,869 installs - etetoolkit k-dense-ai/scientific-agent-skills
Analyzes, manipulates, compares, annotates, and visualizes phylogenetic or other hierarchical trees with ETE 4. Supports Newick/Nexus tree I/O, topology edits and pattern matching, Robinson-Foulds comparisons, gene-tree…
1,868 installs