Skill catalog

Performs RNA velocity analysis with scVelo from spliced and unspliced single-cell RNA counts. Fits deterministic or dynamical models, examines gene phase portraits, builds velocity graphs, estimates relative latent time…

MUST be used whenever fixing test coverage for a Flows app to meet the 80% line coverage hard gate. This skill finds AND fixes coverage gaps — it configures tooling, writes missing tests, covers untested paths, and refa…

Queries the U.S. Treasury Fiscal Data REST API for federal financial data. No API key required. Use for national debt (Debt to the Penny), Daily Treasury Statements, Monthly Treasury Statements, Treasury securities auct…

Binance Margin-trading request using the Binance API. Authentication requires API key and secret key.

Manages biological datasets and models with LaminDB, including artifact registration, lineage tracking, schema validation, Bionty ontology annotation, query/search, collections, branches, storage, and workflow integrati…

Builds, simulates, transpiles, and executes quantum circuits with Qiskit and IBM Quantum Runtime. Use for Qiskit 2.x circuits and operators, V2 Sampler or Estimator primitives, target-aware transpilation, local or noisy…

Light React Three Fiber scenes with direct lights, environment maps, and shadows. Use for light placement, image-based lighting, shadow artifacts, and lighting performance.

Processes, cleans, compares, and searches tandem mass spectra with matchms. Use for MS/MS file I/O, metadata harmonization, peak filtering, spectral similarity, library matching, score matrices, and molecular-similarity…

Reads, validates, and safely exports protocols.io data with current official REST/MCP contracts, or creates non-executing mutation plans. The bundled client makes bounded official-host GET requests only with explicit --…

Conventional Commits 形式で git コミットを作成する。staged 差分から type/scope を推定し、breaking change やシークレット混入 (.env 等) を検出。pre-commit フックを必ず通す (`--no-verify` 不可)。「コミットして」「git commit」「変更を記録して」などで使用。

Supports Gtars for local genomic interval models and set algebra, overlaps and counts, consensus and coverage, tokenization, fragment processing, and refget/BEDbase planning across Python, Rust, and the CLI.

Extracts and preprocesses whole-slide histology image tiles with Histolab. Use for WSI inspection, tissue masks, random/grid/score-based tile extraction, H&E stain normalization, and tile dataset preparation. For multip…

Best practices and guidelines for working with Postgres. Covers schema design, indexing strategies, query optimization, migrations, and common pitfalls. Use when writing SQL, designing database schemas, optimizing queri…

Feishu document read/write operations + comment management. Activate when user mentions Feishu docs, cloud docs, docx links, or document comments.

Official NVIDIA-authored guidance for navigating PhysicsNeMo — pick the model, datapipe, or example for a SciML/AI4Science task (surrogates, forecasting, downscaling, physics-informed, inverse, generative). Points at ex…

Performs genomic interval overlap, nearest, merge, coverage, complement and subtraction on Polars DataFrames, and reads or writes BED, VCF, BCF, BAM, CRAM, GFF, GTF, FASTA and FASTQ data. Use for coordinate-aware genomi…

Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics an…

Analyzes Neuropixels extracellular recordings end-to-end with SpikeInterface. Covers loading SpikeGLX/Open Ephys/NWB data, preprocessing, drift/motion correction, Kilosort4 (and CPU) spike sorting, quality metrics, and…

Processes mass spectrometry data with pyOpenMS. Supports proteomics and metabolomics workflows—feature detection, peptide/protein identification, label-free quantification, adduct/accurate-mass annotation, and complex L…

数学建模非数据型图示绘制阶段。根据 ANALYSIS_MODELING_REPORT.md、RESULTS_REPORT.md 和已有 figures/ 生成技术路线图、子问题求解流程图、模型结构图、数据处理流程图等 DrawIO 图，并导出论文可引用 PDF。

Builds node-based Editor tools with Unity Graph Toolkit (GTK) on Unity 6.6+: graphs, nodes, ports and validation, State Machine API tools on 6.7+, and runtime assets via a scripted importer. Use for custom graph, node o…

Conventional Commits 形式で GitHub PR を作成する。OWASP Top 10 のセキュリティチェック必須で、問題があれば PR 作成を中止。Summary/Test plan/Design を含む body を生成。「PR 作って」「プルリク」「`gh pr create`」などで使用。別リポジトリ (upstream) への貢献は contribute-skill。

Builds and operates reproducible genomics workloads on DNAnexus with the dx CLI, dxpy, apps/applets, native workflows, dxCompiler, and Nextflow. Supports DNAnexus data transfers, dxapp.json development, execution monito…

Builds, registers, debugs, and operates bioinformatics workflows on Latch using the Python SDK, CLI, Latch Data and Registry, Nextflow, Snakemake, programmatic execution, and Latch MCP. Use when authoring or deploying L…

Simulate and audit closed and open quantum-system models with QuTiP 5, including deterministic, trajectory, steady-state, spectral, and phase-space workflows. Use for local quantum-dynamics work where physical assumptio…

Reads AR/AP, historical cash timing, and known fixed costs from the ledger (MYOB, NetSuite, QuickBooks, Xero, or Zoho Books) or from PayPal, Square, or Stripe — or a CSV upload — and produces a 30/60/90-day cash flow fo…

When the user wants to plan, brief, source, or measure organic creator / influencer / UGC marketing for their app — including TikTok creators, Instagram Reels, YouTube Shorts, micro-influencers, paid creator briefs, UGC…

Manage persistent Knowledge Graph for specifications. Provides read, query, update, and validation capabilities for codebase analysis caching. Use when: spec-to-tasks needs to cache/reuse codebase analysis, task-impleme…

Reads projects, searches project feeds, and retrieves recommendations and canonical papers in Paperzilla through the pz CLI. Supports recent recommendations, paper details, markdown-based summaries, recommendation feedb…

Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. Use for pKa and macropKa prediction, conformer and tautomer ensembles, docking and analogue docking, protein-ligand…

This skill should be used whenever users need YouTube video scripts written. On first use, collects comprehensive preferences including script type, tone, target audience, style, video length, hook style, use of humor,…

MUST be used whenever fixing dependency issues in a Flows app. This skill finds AND fixes vulnerabilities, outdated packages, deprecated dependencies, and license issues — it does not just report them. Triggers: depende…

Convert .NET tests from NUnit 3/4 to MSTest v4 while preserving VSTest or MTP. Use for replacing NUnit/NUnit3TestAdapter packages, Test/TestCase/ TestCaseSource/Values attributes, constraint assertions, SetUp/TearDown,…

Authors, reviews, migrates, simulates, and troubleshoots official Opentrons Python Protocol API v2 protocols for Flex and OT-2 robots. Use for robot-specific liquid handling, deck and labware setup, pipettes, modules, r…

GitHub Issue を読み込み、`_/local-plans/<issue-number>-<slug>.md` に詳細計画を作成して**ユーザー承認後**にコードを実装する。実装後はセキュリティレビュー (OWASP Top 10) → テスト実行 → Conventional Commits でコミット。Issue 番号や URL を渡された実装依頼、「Issue #N を実装して」「この Issue を着手」などで使用。

Autonomous NeMo-RL research agent workflow for directed hypothesis testing and open-ended discovery. Guides agents through the full experiment lifecycle: understanding recipes and environments, wiring RL or NeMo-gym run…

Inspects and automates microscopy data workflows against OMERO.server with omero-py, BlitzGateway, OMERO CLI, tables, annotations, ROIs, rendering, and documented OMERO.web APIs. Use this skill for scoped OMERO inventor…

React composition patterns that scale. Use when refactoring components with boolean prop proliferation, building flexible component libraries, or designing reusable APIs. Triggers on tasks involving compound components,…

GitHub Issue を親子構造 (sub-issues) で作成する。`gh issue create` で親・子 Issue を生成し、`gh api .../sub_issues` で親子関係を紐付ける。タイトルは Conventional Commits 形式 (`feat:`, `fix:` 等) を推奨。「Issue 作って」「タスクを分解して Issue 化」などで使用。

Diagnose failed or unhealthy Dynamo deployments. Use when pods, model-cache jobs, PVCs, workers, frontend/router health, endpoints, or benchmark jobs fail; use recipe-runner/router-starter before this for normal bring-u…

Configure NeMo AutoModel job launches for interactive runs, Slurm clusters, and SkyPilot cloud execution.

Stores and retrieves genomic variant calls with TileDB-VCF. Use for indexed single-sample VCF/BCF ingestion, incremental cohorts, region and sample queries, streaming results, allele statistics, QC, and VCF/BCF export l…

Develops and reviews PyLabRobot lab-automation resources, liquid-handling plans, offline simulations, and supported-device integrations. Supports PyLabRobot protocols and API questions; keep physical execution behind an…

Reconstruct data structures by analyzing memory access patterns across functions

Simplified Aura guidance for selecting primitives, keeping token usage consistent, and applying reliable layout/copy/state patterns in Flows and Fusion apps.

Use to select models to run locally with llama.cpp and GGUF on CPU, Mac Metal, CUDA, or ROCm. Covers finding GGUFs, quant selection, running servers, exact GGUF file lookup, conversion, and OpenAI-compatible local servi…

Rebuild slide images, scanned or image-based PPT/PPTX files, and PDF decks into object-level editable PowerPoint (.pptx), preserving speaker notes when supplied. Use for making visual slides editable or reconstructing s…

Select and design a navigation pattern — tabs, drawer, hierarchy, or hub — matched to product structure and user tasks. Use when choosing how users move between sections. For the underlying content structure, use `infor…

Integrates the @cognite/reveal-widget npm package into Flows apps for an interactive Cognite Reveal 3D Scene/CAD/point cloud/360-image viewer. Use when adding 3D viewer, 3D visualization, Reveal, CAD model, Point cloud…

Use this skill to ask the VSS agent's video_understanding tool a fresh visual question about a recorded clip. Not for prior tool output, search hits, or metadata-answerable questions.