Skill catalog

Performs Scanpy single-cell RNA-seq QC, normalization, HVG selection, PCA/UMAP/t-SNE, clustering, exploratory marker ranking, pseudobulk preparation, visualization, and Seurat or SingleCellExperiment RDS conversion to h…

Use when working with multi-item data, batches, paginated APIs, rate-limited APIs, fan-out across multiple branches, anything that needs to "do this for each", or any time the user mentions looping, iterating, batching,…

Queries the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale cell metadata, gene expression slices, Census summary counts, source…

Reads, inspects, writes, transforms, and preflights local DICOM datasets and pixel data. Applies to DICOM metadata, transfer syntaxes, compression plugins, frames, private elements, JSON, and bounded de-identification r…

Use when designing, reviewing, or refactoring a CLI that must serve AI agents alongside humans, or when converting an API or SDK into an agent-usable CLI interface.

Turn a website's observable HTTP traffic into a best-effort OpenAPI 3.1 spec by analyzing a `browser-trace` capture. Use when the user wants to discover/extract API endpoints from a browser session, build an OpenAPI doc…

Builds molecular property prediction and MoleculeNet workflows with DeepChem, including SMILES featurization, scaffold or grouped holdouts, masked labels, graph models and explicit pretrained encoder transfer. Used for…

NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.

Use the Helmor CLI to remote-control Helmor from the terminal. Use when the user asks to inspect Helmor data/settings, manage repositories/workspaces/sessions/files, send prompts to agents, list models, use GitHub integ…

Version-aware guidance for PufferLib reinforcement-learning environments, vectorization, policies, PuffeRL training, evaluation, and safe checkpoint review. Covers the native 5.0 build and environment API, published 3.0…

Production-ready CSS transitions for web apps. Use when implementing notification badges, dropdowns, modals, panel reveals, page transitions, card resizes, number pop-ins, text swaps, icon swaps, success checks, avatar…

Binance Alpha request using the Binance API. Authentication requires API key and secret key.

Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery including SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, paral…

Benchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling Apps, and Data Warehouse queries. Use when automating lab data with benchling-sdk or the v2 API.

Creates or modernizes repository skills with clear activation cues, purposeful support files, and practical review loops. USE FOR: creating a new skill, tightening an existing skill, improving discovery wording, and str…

Install a per-turn canary signal (e.g. starting every reply with the user's name and a turn counter) so silent context degradation becomes visible the moment it happens, and run a recovery protocol when the canary trips…

Verifies Kelos skills.sh installation. Use when asked to run the Kelos e2e skill check.

Contributes to and debugs Node.js core, including nodejs/node commit and PR tone, contribution workflows, native crashes, V8 performance, node-gyp builds, N-API bindings, and libuv issues. Use when drafting or reviewing…

Processes large tabular scientific datasets with Vaex expressions, filtered views, streamed statistics, binned visualizations, and file conversion. Use for larger-than-RAM HDF5, Arrow, CSV, or Parquet analysis, virtual…

Uses the Adaptyv Bio Foundry API and Python SDK to design protein characterization experiments, estimate costs, submit sequences, monitor laboratory progress, and retrieve results. Applies to Adaptyv Foundry, its target…

Create and modify NeMo AutoModel training and evaluation recipes, including YAML structure, builders, and execution flow.

When the user wants to write a social media post for LinkedIn, Twitter/X, Threads, Bluesky, Facebook, Instagram, TikTok, Pinterest, or YouTube. Also use when the user mentions 'write a post,' 'draft a post,' 'LinkedIn p…

Canonical workflow for a task. Read and follow strictly end to end while working on the task.

Infers candidate gene regulatory networks from bulk or single-cell expression data using AertsLab Arboreto GRNBoost2 and GENIE3. Use for transcription factor-target association ranking, compatible Dask execution, sparse…

Comprehensive guide for FinLab quantitative trading package across global stock markets (TW, US, KR, JP, HK; both single-name equities and ETFs/funds). Use when working with trading strategies, backtesting, stock data,…

Runs and analyzes molecular dynamics simulations with OpenMM and MDAnalysis. Sets up protein/small molecule systems, defines force fields, runs energy minimization and production MD, and analyzes trajectories (RMSD, RMS…

Performs bulk RNA-seq differential expression analysis with PyDESeq2, including count validation, formula designs, explicit contrasts, Wald tests, FDR correction, coefficient-matched LFC shrinkage, and result visualizat…

Techniques for planning user research and synthesising it into grounded, confidence-rated findings about what users actually do

Use when you want to expose an n8n workflow as a tool the coding agent can call. Two cases. (1) Wrap n8n API capabilities the MCP doesn't natively expose: folder deletion, project create/rename, tag rename/delete, insta…

Plans, configures, inspects, restarts, and analyzes bounded FluidSim computational-fluid-dynamics simulations with explicit numerical-validity and HPC safety checks. Use for FluidSim solver selection, parameter review,…

Query and analyze Logfire telemetry data — traces, logs, spans, metrics, summaries, and SQL results. Use this skill when the user asks to "query logfire", "search traces", "find logs", "query data", "search spans", "loo…

Work with Notion from the terminal using the `notion` CLI. Use when the user needs to read, create, update, query, or manage Notion pages, databases, blocks, comments, users, or files programmatically. Covers the entire…

Analyzes, validates, converts, and transforms materials structures and computed materials data with pymatgen. Use for local phase diagrams, symmetry sensitivity, electronic-structure I/O, and bounded Materials Project q…

Help users qualify sales leads effectively. Use when someone is wasting time on bad leads, struggling with low conversion rates, needs to build a qualification framework, or wants to improve their discovery process.

Builds and troubleshoots TorchDrug 0.2.1 workflows for molecular graphs, property prediction, self-supervised pretraining, molecule generation, retrosynthesis, protein representation learning, and knowledge graph reason…

Queries and downloads public cancer imaging data from NCI Imaging Data Commons. Supports IDC collection discovery, DICOM access, radiology (CT, MR, PET) and pathology AI datasets, metadata SQL, visualization, licensing,…

Operates Amazon Kinesis Data Streams (KDS). Covers streaming tables and Amazon S3 delivery - serverless, fully managed delivery from a KDS stream to Apache Iceberg tables on S3 Tables or to general-purpose S3 buckets. I…

Create, update, refactor, explain, or review Microsoft Agent Framework solutions using shared guidance plus language-specific references for .NET and Python.

Builds node-based Editor tools with Unity Graph Toolkit (GTK) on Unity 6.6+: graphs, nodes, ports and validation, State Machine API tools on 6.7+, and runtime assets via a scripted importer. Use for custom graph, node o…

Help users systematically document their impact, identify skill gaps, and collaborate with their managers to secure a promotion by proving they are already operating at the next level.

End-to-end data engineering pipeline for Harvard Art Museums API with ETL, SQL analytics, and Streamlit visualization

Uses the Biohub esm Python SDK for ESM3 protein generation, ESMC embeddings, and ESMFold2 all-atom folding. Applies to local model inference and Biohub hosted clients, including former Forge workflows; distinguishes the…

Use when working with n8n's built-in Data Tables, designing schemas, inserting/updating/upserting rows, deduping, or querying. Triggers on "Data Table", "data table", `n8n-nodes-base.dataTable`, "dedup", "idempotency",…

Use to summarize a recorded video via the LVS summarization microservice (HITL-gated) with a VLM fallback. Not for report generation or live RTSP captioning.

Stores and queries chunked N-D scientific arrays with Zarr-Python 3, including codecs, sharding, S3/GCS storage, and NumPy/Dask/Xarray integration. Use for array layout, bounded I/O, format migration, or scientific meta…

Use when an n8n-mcp account targets more than one n8n instance — i.e. the `n8n_instances` tool is available, the user mentions multiple n8n instances or environments (prod vs staging, several teams or clients), several…

Builds and validates PyHealth clinical machine-learning pipelines for EHR, signals, imaging, and medical codes. Use for PyHealth dataset loading, MIMIC-III/IV, eICU or OMOP prediction tasks, patient-level evaluation, mo…

Fits probabilistic models for single-cell omics, including scVI batch integration, scANVI annotation, totalVI CITE-seq, MultiVI RNA/ATAC integration, and posterior differential expression. Use for generative modeling, r…

Builds and audits reproducible NeuroKit2 research workflows for physiological time-series preprocessing, event/interval analysis, multimodal alignment, variability, and complexity. Use when code imports neurokit2 or nee…

Applies the DHDNA framework as an exploratory rubric for reasoning and writing patterns in supplied text. Used for explicit requests for DHDNA, cognitive-style reflection, a thinking-pattern profile, or comparisons of t…